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Cluster: ShaoY_2019_ERR3406283_bin.5_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_45 54841 58857 + 1.B.40.2.2
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_46 58994 60973 - 4.A.2.1.4
STP ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_47 61014 61922 - PfkB
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_48 61959 63296 - 2.A.35.1.2
pfam ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_49 63355 64188 - DAP_epimerase | DAP_epimerase
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_50 64392 66119 + 8.A.7.1.1
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_51 66233 66493 + 8.A.8.1.1
pfam ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_52 66539 66817 - Trns_repr_metal
CAZyme ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_53 67020 67820 + GT51
pfam ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_54 68081 69292 + Arginosuc_synth | Arginosuc_syn_C
pfam ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_55 69292 70719 + Lyase_1 | ASL_C2
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_56 71239 72570 + 2.A.3.2.1
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_57 73222 74160 + 3.A.1.5.11
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_58 74160 74981 + 3.A.1.5.38
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_59 75068 76633 + 3.A.1.5.3
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_60 76646 77443 + 3.A.1.5.25
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_61 77436 78257 + 3.A.1.5.12
TC ShaoY_2019_ERR3406283_bin.5_k141_26437 ShaoY_2019_ERR3406283_bin.5_k141_26437_62 78460 80022 + 3.A.1.5.3
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_45
Type: TC
Location: 54841 - 58857 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_46
Type: TC
Location: 58994 - 60973 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_47
Type: STP
Location: 61014 - 61922 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_48
Type: TC
Location: 61959 - 63296 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_49
Type: pfam
Location: 63355 - 64188 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_50
Type: TC
Location: 64392 - 66119 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_51
Type: TC
Location: 66233 - 66493 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_52
Type: pfam
Location: 66539 - 66817 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_53
Type: CAZyme
Location: 67020 - 67820 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_54
Type: pfam
Location: 68081 - 69292 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_55
Type: pfam
Location: 69292 - 70719 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_56
Type: TC
Location: 71239 - 72570 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_57
Type: TC
Location: 73222 - 74160 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_58
Type: TC
Location: 74160 - 74981 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_59
Type: TC
Location: 75068 - 76633 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_60
Type: TC
Location: 76646 - 77443 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_61
Type: TC
Location: 77436 - 78257 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_26437_62
Type: TC
Location: 78460 - 80022 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_C
→
Class
Negativicutes
→
Order
Veillonellales
→
Family
Veillonellaceae
→
Genus
Veillonella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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