Cluster: ShaoY_2019_ERR3406283_bin.5_CGC1
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406283_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_24 | 25819 | 27186 | - | 4.A.7.1.4 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_25 | 27207 | 27482 | - | 4.A.7.1.2 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_26 | 27498 | 27953 | - | 4.A.7.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_27 | 28156 | 28332 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_28 | 28440 | 29906 | - | Fer4 |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_29 | 30038 | 31993 | - | 3.A.1.120.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_30 | 32133 | 32453 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_31 | 32549 | 33703 | - | GT28 |
| pfam | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_32 | 33801 | 34100 | - | Bac_DNA_binding | HU-HIG |
| pfam | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_33 | 34153 | 34932 | - | MazG | MazG |
| TC | ShaoY_2019_ERR3406283_bin.5_k141_2208 | ShaoY_2019_ERR3406283_bin.5_k141_2208_34 | 34916 | 36520 | - | 2.A.66.2.14 |
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_24
Type: TC
Location: 25819 - 27186 (-)
Type: TC
Location: 25819 - 27186 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_25
Type: TC
Location: 27207 - 27482 (-)
Type: TC
Location: 27207 - 27482 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_26
Type: TC
Location: 27498 - 27953 (-)
Type: TC
Location: 27498 - 27953 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_27
Type:
Location: 28156 - 28332 (-)
Type:
Location: 28156 - 28332 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_28
Type: STP
Location: 28440 - 29906 (-)
Type: STP
Location: 28440 - 29906 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_29
Type: TC
Location: 30038 - 31993 (-)
Type: TC
Location: 30038 - 31993 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_30
Type:
Location: 32133 - 32453 (+)
Type:
Location: 32133 - 32453 (+)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_31
Type: CAZyme
Location: 32549 - 33703 (-)
Type: CAZyme
Location: 32549 - 33703 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_32
Type: pfam
Location: 33801 - 34100 (-)
Type: pfam
Location: 33801 - 34100 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_33
Type: pfam
Location: 34153 - 34932 (-)
Type: pfam
Location: 34153 - 34932 (-)
Gene ID: ShaoY_2019_ERR3406283_bin.5_k141_2208_34
Type: TC
Location: 34916 - 36520 (-)
Type: TC
Location: 34916 - 36520 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.