Cluster: ShaoY_2019_ERR3406275_bin.12_CGC22
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23812 | ShaoY_2019_ERR3406275_bin.12_k141_23812_70 | 74730 | 75698 | + | 2.A.3.2.3 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406275_bin.12_k141_23812 | ShaoY_2019_ERR3406275_bin.12_k141_23812_71 | 75747 | 76193 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23812 | ShaoY_2019_ERR3406275_bin.12_k141_23812_72 | 76831 | 79191 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23812 | ShaoY_2019_ERR3406275_bin.12_k141_23812_73 | 79313 | 80509 | + | 2.A.1.2.18 |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_23812 | ShaoY_2019_ERR3406275_bin.12_k141_23812_74 | 80664 | 82040 | + | GH13_20 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23812_70
Type: TC
Location: 74730 - 75698 (+)
Type: TC
Location: 74730 - 75698 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23812_71
Type:
Location: 75747 - 76193 (+)
Type:
Location: 75747 - 76193 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23812_72
Type: TC
Location: 76831 - 79191 (+)
Type: TC
Location: 76831 - 79191 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23812_73
Type: TC
Location: 79313 - 80509 (+)
Type: TC
Location: 79313 - 80509 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23812_74
Type: CAZyme
Location: 80664 - 82040 (+)
Type: CAZyme
Location: 80664 - 82040 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406275_bin.12_k141_23812_70 | vegan > omnivore | 1.76184 | 0.01882 |
| ShaoY_2019_ERR3406275_bin.12_k141_23812_71 | vegan > omnivore | 1.41579 | 0.01882 |