Cluster: ShaoY_2019_ERR3406275_bin.12_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_31 | 29700 | 30143 | + | 4.A.6.1.16 |
| pfam | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_32 | 30143 | 30424 | + | YajC |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_33 | 30461 | 30943 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_34 | 31034 | 31834 | + | 4.A.6.1.4 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_35 | 31824 | 32906 | + | 4.A.6.1.4 |
| TF | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_36 | 33091 | 33822 | + | GntR |
| STP | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_37 | 33937 | 35103 | + | SIS | SIS |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_23172 | ShaoY_2019_ERR3406275_bin.12_k141_23172_38 | 35222 | 36391 | + | CE9 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_31
Type: TC
Location: 29700 - 30143 (+)
Type: TC
Location: 29700 - 30143 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_32
Type: pfam
Location: 30143 - 30424 (+)
Type: pfam
Location: 30143 - 30424 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_33
Type: TC
Location: 30461 - 30943 (+)
Type: TC
Location: 30461 - 30943 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_34
Type: TC
Location: 31034 - 31834 (+)
Type: TC
Location: 31034 - 31834 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_35
Type: TC
Location: 31824 - 32906 (+)
Type: TC
Location: 31824 - 32906 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_36
Type: TF
Location: 33091 - 33822 (+)
Type: TF
Location: 33091 - 33822 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_37
Type: STP
Location: 33937 - 35103 (+)
Type: STP
Location: 33937 - 35103 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_23172_38
Type: CAZyme
Location: 35222 - 36391 (+)
Type: CAZyme
Location: 35222 - 36391 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.