Cluster: ShaoY_2019_ERR3406275_bin.12_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_65 | 81027 | 83354 | - | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_66 | 83478 | 83699 | - | 9.A.8.1.6 |
| STP | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_67 | 83739 | 83981 | - | FeoA |
| STP | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_68 | 84170 | 84418 | - | PTS-HPr |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_69 | 84841 | 86304 | - | 2.A.3.7.4 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_70 | 86458 | 86913 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_20862 | ShaoY_2019_ERR3406275_bin.12_k141_20862_71 | 86917 | 89925 | - | GH2 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_65
Type: TC
Location: 81027 - 83354 (-)
Type: TC
Location: 81027 - 83354 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_66
Type: TC
Location: 83478 - 83699 (-)
Type: TC
Location: 83478 - 83699 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_67
Type: STP
Location: 83739 - 83981 (-)
Type: STP
Location: 83739 - 83981 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_68
Type: STP
Location: 84170 - 84418 (-)
Type: STP
Location: 84170 - 84418 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_69
Type: TC
Location: 84841 - 86304 (-)
Type: TC
Location: 84841 - 86304 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_70
Type:
Location: 86458 - 86913 (-)
Type:
Location: 86458 - 86913 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_20862_71
Type: CAZyme
Location: 86917 - 89925 (-)
Type: CAZyme
Location: 86917 - 89925 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.