Cluster: ShaoY_2019_ERR3406275_bin.12_CGC13
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- CGC Family ID: CGCFAM_00014
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_1 | 208 | 1629 | - | GH1 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_2 | 1705 | 3384 | - | 4.A.3.1.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_3 | 3345 | 3482 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_4 | 3758 | 4768 | + | LacI |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_5 | 5129 | 6568 | - | GH1 |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_6 | 6639 | 8414 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_7 | 8773 | 9777 | + | LacI |
| TC | ShaoY_2019_ERR3406275_bin.12_k141_16051 | ShaoY_2019_ERR3406275_bin.12_k141_16051_8 | 9992 | 10330 | + | 4.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_1
Type: CAZyme
Location: 208 - 1629 (-)
Type: CAZyme
Location: 208 - 1629 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_2
Type: TC
Location: 1705 - 3384 (-)
Type: TC
Location: 1705 - 3384 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_3
Type:
Location: 3345 - 3482 (-)
Type:
Location: 3345 - 3482 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_4
Type: TF
Location: 3758 - 4768 (+)
Type: TF
Location: 3758 - 4768 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_5
Type: CAZyme
Location: 5129 - 6568 (-)
Type: CAZyme
Location: 5129 - 6568 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_6
Type: TC
Location: 6639 - 8414 (-)
Type: TC
Location: 6639 - 8414 (-)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_7
Type: TF
Location: 8773 - 9777 (+)
Type: TF
Location: 8773 - 9777 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_16051_8
Type: TC
Location: 9992 - 10330 (+)
Type: TC
Location: 9992 - 10330 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.