Cluster: ShaoY_2019_ERR3406275_bin.12_CGC1
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406275_bin.12
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_8 | 9130 | 9795 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_9 | 9796 | 10629 | + | GT2 |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_10 | 10634 | 11626 | + | GT2 |
| pfam | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_11 | 11822 | 12937 | + | EpsG |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_12 | 12930 | 13925 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_13 | 13938 | 14066 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406275_bin.12_k141_2766 | ShaoY_2019_ERR3406275_bin.12_k141_2766_14 | 14314 | 15348 | + | GT2 |
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_8
Type: TC
Location: 9130 - 9795 (+)
Type: TC
Location: 9130 - 9795 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_9
Type: CAZyme
Location: 9796 - 10629 (+)
Type: CAZyme
Location: 9796 - 10629 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_10
Type: CAZyme
Location: 10634 - 11626 (+)
Type: CAZyme
Location: 10634 - 11626 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_11
Type: pfam
Location: 11822 - 12937 (+)
Type: pfam
Location: 11822 - 12937 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_12
Type: CAZyme
Location: 12930 - 13925 (+)
Type: CAZyme
Location: 12930 - 13925 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_13
Type:
Location: 13938 - 14066 (+)
Type:
Location: 13938 - 14066 (+)
Gene ID: ShaoY_2019_ERR3406275_bin.12_k141_2766_14
Type: CAZyme
Location: 14314 - 15348 (+)
Type: CAZyme
Location: 14314 - 15348 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.