Cluster: ShaoY_2019_ERR3406248_bin.10_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3406248_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_14 | 15062 | 16003 | - | GT2 |
| pfam | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_15 | 16000 | 17241 | - | Wzy_C |
| pfam | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_16 | 17234 | 18328 | - | PS_pyruv_trans |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_17 | 18331 | 19338 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_18 | 19357 | 20370 | - | GT32 |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_19 | 20363 | 21646 | - | GT4 |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_20 | 21643 | 22767 | - | GT4 |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_6808 | ShaoY_2019_ERR3406248_bin.10_k141_6808_21 | 22768 | 23529 | - | 9.B.18.1.2 |
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_14
Type: CAZyme
Location: 15062 - 16003 (-)
Type: CAZyme
Location: 15062 - 16003 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_15
Type: pfam
Location: 16000 - 17241 (-)
Type: pfam
Location: 16000 - 17241 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_16
Type: pfam
Location: 17234 - 18328 (-)
Type: pfam
Location: 17234 - 18328 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_17
Type: CAZyme
Location: 18331 - 19338 (-)
Type: CAZyme
Location: 18331 - 19338 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_18
Type: CAZyme
Location: 19357 - 20370 (-)
Type: CAZyme
Location: 19357 - 20370 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_19
Type: CAZyme
Location: 20363 - 21646 (-)
Type: CAZyme
Location: 20363 - 21646 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_20
Type: CAZyme
Location: 21643 - 22767 (-)
Type: CAZyme
Location: 21643 - 22767 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_6808_21
Type: TC
Location: 22768 - 23529 (-)
Type: TC
Location: 22768 - 23529 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406248_bin.10_k141_6808_19 | vegetarian > vegan | 1.63475 | 0.02829 |
| ShaoY_2019_ERR3406248_bin.10_k141_6808_20 | vegetarian > vegan | 2.57450 | 0.02829 |