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Cluster: ShaoY_2019_ERR3406248_bin.10_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_2 478 2745 + GT35
TC ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_3 3282 4481 - 3.A.1.1.22
TC ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_4 4550 5389 - 3.A.1.1.45
TC ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_5 5389 6243 - 3.A.1.1.45
TC ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_6 6331 7647 - 3.A.1.1.45
TF ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_7 7954 8673 - GntR
TC ShaoY_2019_ERR3406248_bin.10_k141_4092 ShaoY_2019_ERR3406248_bin.10_k141_4092_8 8936 11353 + 4.A.1.1.8
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_2
Type: CAZyme
Location: 478 - 2745 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_3
Type: TC
Location: 3282 - 4481 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_4
Type: TC
Location: 4550 - 5389 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_5
Type: TC
Location: 5389 - 6243 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_6
Type: TC
Location: 6331 - 7647 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_7
Type: TF
Location: 7954 - 8673 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_4092_8
Type: TC
Location: 8936 - 11353 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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