Cluster: ShaoY_2019_ERR3406248_bin.10_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406248_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_14812 | ShaoY_2019_ERR3406248_bin.10_k141_14812_1 | 1 | 678 | - | GT2 |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_14812 | ShaoY_2019_ERR3406248_bin.10_k141_14812_2 | 680 | 1435 | - | 3.A.1.103.1 |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_14812 | ShaoY_2019_ERR3406248_bin.10_k141_14812_3 | 1445 | 2257 | - | 3.A.1.103.4 |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_14812 | ShaoY_2019_ERR3406248_bin.10_k141_14812_4 | 2415 | 3551 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_14812 | ShaoY_2019_ERR3406248_bin.10_k141_14812_5 | 3747 | 5738 | + | GT2 |
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_14812_1
Type: CAZyme
Location: 1 - 678 (-)
Type: CAZyme
Location: 1 - 678 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_14812_2
Type: TC
Location: 680 - 1435 (-)
Type: TC
Location: 680 - 1435 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_14812_3
Type: TC
Location: 1445 - 2257 (-)
Type: TC
Location: 1445 - 2257 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_14812_4
Type: CAZyme
Location: 2415 - 3551 (-)
Type: CAZyme
Location: 2415 - 3551 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_14812_5
Type: CAZyme
Location: 3747 - 5738 (+)
Type: CAZyme
Location: 3747 - 5738 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406248_bin.10_k141_14812_1 | vegetarian > omnivore | 1.88686 | 0.04897 |
| ShaoY_2019_ERR3406248_bin.10_k141_14812_1 | vegetarian > vegan | 1.94171 | 0.02829 |
| ShaoY_2019_ERR3406248_bin.10_k141_14812_3 | vegetarian > vegan | 2.27717 | 0.02829 |
| ShaoY_2019_ERR3406248_bin.10_k141_14812_4 | vegetarian > omnivore | 1.21300 | 0.04897 |
| ShaoY_2019_ERR3406248_bin.10_k141_14812_4 | vegetarian > vegan | 2.25792 | 0.02829 |