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Cluster: ShaoY_2019_ERR3406248_bin.10_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_12 12138 12476 - 4.A.3.1.2
TF ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_13 12691 13695 - LacI
TC ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_14 14053 15828 + 4.A.3.1.1
CAZyme ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_15 15894 17333 + GH1
TF ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_16 17601 18638 - LacI
CAZyme ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_17 18980 20422 + GH1
TC ShaoY_2019_ERR3406248_bin.10_k141_11993 ShaoY_2019_ERR3406248_bin.10_k141_11993_18 20599 21063 + 4.A.3.1.1
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_12
Type: TC
Location: 12138 - 12476 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_13
Type: TF
Location: 12691 - 13695 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_14
Type: TC
Location: 14053 - 15828 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_15
Type: CAZyme
Location: 15894 - 17333 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_16
Type: TF
Location: 17601 - 18638 (-)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_17
Type: CAZyme
Location: 18980 - 20422 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_11993_18
Type: TC
Location: 20599 - 21063 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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