Cluster: ShaoY_2019_ERR3406248_bin.10_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406248_bin.10
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_10 | 10485 | 13493 | + | GH2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_11 | 13497 | 13952 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_12 | 14106 | 15569 | + | 2.A.3.7.4 |
| STP | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_13 | 15992 | 16240 | + | PTS-HPr |
| STP | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_14 | 16429 | 16671 | + | FeoA |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_15 | 16711 | 16932 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406248_bin.10_k141_9742 | ShaoY_2019_ERR3406248_bin.10_k141_9742_16 | 17056 | 19383 | + | 9.A.8.1.6 |
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_10
Type: CAZyme
Location: 10485 - 13493 (+)
Type: CAZyme
Location: 10485 - 13493 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_11
Type:
Location: 13497 - 13952 (+)
Type:
Location: 13497 - 13952 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_12
Type: TC
Location: 14106 - 15569 (+)
Type: TC
Location: 14106 - 15569 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_13
Type: STP
Location: 15992 - 16240 (+)
Type: STP
Location: 15992 - 16240 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_14
Type: STP
Location: 16429 - 16671 (+)
Type: STP
Location: 16429 - 16671 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_15
Type: TC
Location: 16711 - 16932 (+)
Type: TC
Location: 16711 - 16932 (+)
Gene ID: ShaoY_2019_ERR3406248_bin.10_k141_9742_16
Type: TC
Location: 17056 - 19383 (+)
Type: TC
Location: 17056 - 19383 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.