Cluster: ShaoY_2019_ERR3406243_bin.1_CGC3
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406243_bin.1
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_22 | 19453 | 22992 | - | 3.A.1.129.1 |
| TC | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_23 | 23117 | 24136 | - | 3.D.4.3.2 |
| TC | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_24 | 24127 | 25515 | - | 3.D.4.3.2 |
| TF | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_25 | 25573 | 26025 | - | Rrf2 |
| TC | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_26 | 26197 | 27195 | - | 2.A.20.1.5 |
| pfam | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_27 | 27188 | 27817 | - | PhoU_div |
| pfam | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_28 | 27896 | 28390 | - | MoCF_biosynth |
| CAZyme | ShaoY_2019_ERR3406243_bin.1_k141_3458 | ShaoY_2019_ERR3406243_bin.1_k141_3458_29 | 28399 | 29142 | - | CE4 |
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_22
Type: TC
Location: 19453 - 22992 (-)
Type: TC
Location: 19453 - 22992 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_23
Type: TC
Location: 23117 - 24136 (-)
Type: TC
Location: 23117 - 24136 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_24
Type: TC
Location: 24127 - 25515 (-)
Type: TC
Location: 24127 - 25515 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_25
Type: TF
Location: 25573 - 26025 (-)
Type: TF
Location: 25573 - 26025 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_26
Type: TC
Location: 26197 - 27195 (-)
Type: TC
Location: 26197 - 27195 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_27
Type: pfam
Location: 27188 - 27817 (-)
Type: pfam
Location: 27188 - 27817 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_28
Type: pfam
Location: 27896 - 28390 (-)
Type: pfam
Location: 27896 - 28390 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_3458_29
Type: CAZyme
Location: 28399 - 29142 (-)
Type: CAZyme
Location: 28399 - 29142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_C
Class
Negativicutes
Order
Veillonellales
Family
Veillonellaceae
Genus
Veillonella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.