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Cluster: ShaoY_2019_ERR3406243_bin.1_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_2 571 2175 + 2.A.66.2.14
pfam ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_3 2159 2938 + MazG | MazG
pfam ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_4 2991 3290 + Bac_DNA_binding | HU-HIG
CAZyme ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_5 3388 4542 + GT28
NULL(UNKNOWN) ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_6 4638 4958 - NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_7 5098 7053 + 3.A.1.120.6
STP ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_8 7185 8651 + Fer4
NULL(UNKNOWN) ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_9 8759 8935 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_10 9140 9595 + 4.A.7.1.1
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_11 9611 9886 + 4.A.7.1.2
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_12 9907 11274 + 4.A.7.1.4
pfam ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_13 11274 11672 + DUF454
TF ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_14 11871 12596 + 0036286
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_15 12962 17983 + 1.B.14.1.4
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_16 18193 21078 + 1.B.14.1.4
NULL(UNKNOWN) ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_17 21079 23259 + NULL(UNKNOWN)
[View Structural Homologs]
TC ShaoY_2019_ERR3406243_bin.1_k141_2080 ShaoY_2019_ERR3406243_bin.1_k141_2080_18 23296 23913 + 1.A.30.2.4
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_2
Type: TC
Location: 571 - 2175 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_3
Type: pfam
Location: 2159 - 2938 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_4
Type: pfam
Location: 2991 - 3290 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_5
Type: CAZyme
Location: 3388 - 4542 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_6
Type:
Location: 4638 - 4958 (-)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_7
Type: TC
Location: 5098 - 7053 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_8
Type: STP
Location: 7185 - 8651 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_9
Type:
Location: 8759 - 8935 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_10
Type: TC
Location: 9140 - 9595 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_11
Type: TC
Location: 9611 - 9886 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_12
Type: TC
Location: 9907 - 11274 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_13
Type: pfam
Location: 11274 - 11672 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_14
Type: TF
Location: 11871 - 12596 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_15
Type: TC
Location: 12962 - 17983 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_16
Type: TC
Location: 18193 - 21078 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_17
Type:
Location: 21079 - 23259 (+)
Gene ID: ShaoY_2019_ERR3406243_bin.1_k141_2080_18
Type: TC
Location: 23296 - 23913 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_C
→
Class
Negativicutes
→
Order
Veillonellales
→
Family
Veillonellaceae
→
Genus
Veillonella
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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