Cluster: ShaoY_2019_ERR3406226_bin.7_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 5
- Substrate:
- Genome ID: ShaoY_2019_ERR3406226_bin.7
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_85 | 99769 | 100518 | + | 9.B.18.1.2 |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_86 | 100505 | 101311 | + | GT26 |
| pfam | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_87 | 101304 | 102419 | + | Epimerase_2 |
| pfam | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_88 | 102412 | 103518 | + | Glycos_transf_1 | Glyco_trans_1_4 |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_89 | 103515 | 104594 | + | GT4 |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_90 | 104575 | 105333 | + | GT32 |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_91 | 105330 | 106250 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_92 | 106247 | 107527 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_93 | 107529 | 108479 | + | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_94 | 108487 | 109389 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406226_bin.7_k141_5787 | ShaoY_2019_ERR3406226_bin.7_k141_5787_95 | 109890 | 111320 | + | 2.A.66.2.23 |
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_85
Type: TC
Location: 99769 - 100518 (+)
Type: TC
Location: 99769 - 100518 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_86
Type: CAZyme
Location: 100505 - 101311 (+)
Type: CAZyme
Location: 100505 - 101311 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_87
Type: pfam
Location: 101304 - 102419 (+)
Type: pfam
Location: 101304 - 102419 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_88
Type: pfam
Location: 102412 - 103518 (+)
Type: pfam
Location: 102412 - 103518 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_89
Type: CAZyme
Location: 103515 - 104594 (+)
Type: CAZyme
Location: 103515 - 104594 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_90
Type: CAZyme
Location: 104575 - 105333 (+)
Type: CAZyme
Location: 104575 - 105333 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_91
Type: CAZyme
Location: 105330 - 106250 (+)
Type: CAZyme
Location: 105330 - 106250 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_92
Type:
Location: 106247 - 107527 (+)
Type:
Location: 106247 - 107527 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_93
Type: CAZyme
Location: 107529 - 108479 (+)
Type: CAZyme
Location: 107529 - 108479 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_94
Type:
Location: 108487 - 109389 (+)
Type:
Location: 108487 - 109389 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_5787_95
Type: TC
Location: 109890 - 111320 (+)
Type: TC
Location: 109890 - 111320 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406226_bin.7_k141_5787_87 | vegan > omnivore | 1.09515 | 0.00701 |