Cluster: ShaoY_2019_ERR3406226_bin.7_CGC17
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406226_bin.7
- CGC Family ID: CGCFAM_00290
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_44 | 42633 | 43991 | - | 2.A.33.1.1 |
| pfam | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_45 | 44259 | 45182 | - | DHH | DHHA2 |
| STP | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_46 | 45349 | 46302 | - | Glucokinase |
| TC | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_47 | 46544 | 46876 | - | 4.A.3.2.3 |
| TC | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_48 | 46886 | 47188 | - | 4.A.3.2.9 |
| TC | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_49 | 47351 | 48136 | - | 4.A.3.2.9 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_50 | 48210 | 48422 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_51 | 48335 | 48694 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406226_bin.7_k141_24988 | ShaoY_2019_ERR3406226_bin.7_k141_24988_52 | 48814 | 50214 | - | GH1 |
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_44
Type: TC
Location: 42633 - 43991 (-)
Type: TC
Location: 42633 - 43991 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_45
Type: pfam
Location: 44259 - 45182 (-)
Type: pfam
Location: 44259 - 45182 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_46
Type: STP
Location: 45349 - 46302 (-)
Type: STP
Location: 45349 - 46302 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_47
Type: TC
Location: 46544 - 46876 (-)
Type: TC
Location: 46544 - 46876 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_48
Type: TC
Location: 46886 - 47188 (-)
Type: TC
Location: 46886 - 47188 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_49
Type: TC
Location: 47351 - 48136 (-)
Type: TC
Location: 47351 - 48136 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_50
Type:
Location: 48210 - 48422 (+)
Type:
Location: 48210 - 48422 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_51
Type:
Location: 48335 - 48694 (-)
Type:
Location: 48335 - 48694 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24988_52
Type: CAZyme
Location: 48814 - 50214 (-)
Type: CAZyme
Location: 48814 - 50214 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406226_bin.7_k141_24988_48 | vegan > omnivore | 1.03891 | 0.00701 |