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Cluster: ShaoY_2019_ERR3406226_bin.7_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_1 203 1963 - 4.A.3.1.1
CAZyme ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_2 2140 3582 - GH1
TF ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_3 3924 4961 + LacI
CAZyme ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_4 5238 6677 - GH1
TC ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_5 6744 8510 - 4.A.3.1.1
TF ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_6 8868 9872 + LacI
TC ShaoY_2019_ERR3406226_bin.7_k141_24491 ShaoY_2019_ERR3406226_bin.7_k141_24491_7 10087 10425 + 4.A.3.1.2
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_1
Type: TC
Location: 203 - 1963 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_2
Type: CAZyme
Location: 2140 - 3582 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_3
Type: TF
Location: 3924 - 4961 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_4
Type: CAZyme
Location: 5238 - 6677 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_5
Type: TC
Location: 6744 - 8510 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_6
Type: TF
Location: 8868 - 9872 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_24491_7
Type: TC
Location: 10087 - 10425 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406226_bin.7_k141_24491_3 vegetarian > omnivore 1.04069 0.00861

🧭 Explore Read Mapping of CGC

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