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Cluster: ShaoY_2019_ERR3406226_bin.7_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_3 3028 3795 - 1.A.23.4.2
pfam ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_4 3925 5973 - Metallophos | 5_nucleotid_C
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_5 6046 6840 - 3.A.1.34.1
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_6 6833 7756 - 3.A.1.34.1
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_7 7961 8941 - 3.A.1.34.1
NULL(UNKNOWN) ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_8 9102 9887 - NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_9 10146 11549 - tRNA-synt_2 | tRNA_anti-codon
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_10 11686 13620 - 9.B.97.5.1
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_11 13855 14496 - 4.A.1.2.6
peptidase ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_12 14665 15564 + S09.UPW
pfam ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_13 15989 17212 - Zn_Ribbon_1
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_14 17725 20085 + 9.A.8.1.6
TC ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_15 20207 21403 + 2.A.1.2.18
CAZyme ShaoY_2019_ERR3406226_bin.7_k141_13202 ShaoY_2019_ERR3406226_bin.7_k141_13202_16 21557 22933 + GH13_20
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_3
Type: TC
Location: 3028 - 3795 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_4
Type: pfam
Location: 3925 - 5973 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_5
Type: TC
Location: 6046 - 6840 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_6
Type: TC
Location: 6833 - 7756 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_7
Type: TC
Location: 7961 - 8941 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_8
Type:
Location: 9102 - 9887 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_9
Type: pfam
Location: 10146 - 11549 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_10
Type: TC
Location: 11686 - 13620 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_11
Type: TC
Location: 13855 - 14496 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_12
Type: peptidase
Location: 14665 - 15564 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_13
Type: pfam
Location: 15989 - 17212 (-)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_14
Type: TC
Location: 17725 - 20085 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_15
Type: TC
Location: 20207 - 21403 (+)
Gene ID: ShaoY_2019_ERR3406226_bin.7_k141_13202_16
Type: CAZyme
Location: 21557 - 22933 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406226_bin.7_k141_13202_4 vegan > omnivore 1.83366 0.00701
ShaoY_2019_ERR3406226_bin.7_k141_13202_4 vegetarian > omnivore 1.49034 0.00861
ShaoY_2019_ERR3406226_bin.7_k141_13202_10 vegan > omnivore 1.31393 0.00701
ShaoY_2019_ERR3406226_bin.7_k141_13202_10 vegetarian > omnivore 1.39806 0.02401

🧭 Explore Read Mapping of CGC

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