Cluster: ShaoY_2019_ERR3406169_bin.5_CGC8
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.5_k141_553 | ShaoY_2019_ERR3406169_bin.5_k141_553_93 | 92114 | 92605 | - | 9.B.105.1.1 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_553 | ShaoY_2019_ERR3406169_bin.5_k141_553_94 | 92722 | 94092 | - | Hexapep | Hexapep | NTP_transferase | IspD | NTP_transf_3 | Hexapep_2 | Hexapep_2 |
| peptidase | ShaoY_2019_ERR3406169_bin.5_k141_553 | ShaoY_2019_ERR3406169_bin.5_k141_553_95 | 94351 | 95988 | + | C26.964 |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_553 | ShaoY_2019_ERR3406169_bin.5_k141_553_96 | 96111 | 97046 | + | GT2 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_553_93
Type: TC
Location: 92114 - 92605 (-)
Type: TC
Location: 92114 - 92605 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_553_94
Type: pfam
Location: 92722 - 94092 (-)
Type: pfam
Location: 92722 - 94092 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_553_95
Type: peptidase
Location: 94351 - 95988 (+)
Type: peptidase
Location: 94351 - 95988 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_553_96
Type: CAZyme
Location: 96111 - 97046 (+)
Type: CAZyme
Location: 96111 - 97046 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_553_93 | vegan > omnivore | 1.01369 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_553_93 | vegetarian > omnivore | 1.04963 | 0.00878 |