Cluster: ShaoY_2019_ERR3406169_bin.5_CGC6
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_20 | 20679 | 21452 | - | 3.A.1.14.19 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_21 | 21452 | 22501 | - | 3.A.1.14.5 |
| STP | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_22 | 22517 | 23632 | - | Peripla_BP_2 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_23 | 23732 | 24871 | - | Cytochrom_C | CCP_MauG |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_24 | 24951 | 26069 | - | GH103 |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_25 | 26103 | 26906 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_26 | 26929 | 27810 | - | GT2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_27 | 27803 | 29002 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_501 | ShaoY_2019_ERR3406169_bin.5_k141_501_28 | 29011 | 29781 | - | GT25 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_20
Type: TC
Location: 20679 - 21452 (-)
Type: TC
Location: 20679 - 21452 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_21
Type: TC
Location: 21452 - 22501 (-)
Type: TC
Location: 21452 - 22501 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_22
Type: STP
Location: 22517 - 23632 (-)
Type: STP
Location: 22517 - 23632 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_23
Type: pfam
Location: 23732 - 24871 (-)
Type: pfam
Location: 23732 - 24871 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_24
Type: CAZyme
Location: 24951 - 26069 (-)
Type: CAZyme
Location: 24951 - 26069 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_25
Type: CAZyme
Location: 26103 - 26906 (-)
Type: CAZyme
Location: 26103 - 26906 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_26
Type: CAZyme
Location: 26929 - 27810 (-)
Type: CAZyme
Location: 26929 - 27810 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_27
Type:
Location: 27803 - 29002 (-)
Type:
Location: 27803 - 29002 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_28
Type: CAZyme
Location: 29011 - 29781 (-)
Type: CAZyme
Location: 29011 - 29781 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_501_22 | vegan > omnivore | 1.51729 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_501_22 | vegetarian > omnivore | 1.12741 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_501_26 | vegetarian > omnivore | 2.09653 | 0.00878 |