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Cluster: ShaoY_2019_ERR3406169_bin.5_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_7 7556 9955 + GT51
TC ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_8 10175 12079 + 2.A.108.2.10
TC ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_9 12108 12629 + 2.A.108.2.10
pfam ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_10 12745 14142 + YHS | FtrD-like
TC ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_11 14142 15482 + 3.A.1.122.8
pfam ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_12 15469 16602 + FtsX | MacB_PCD
TC ShaoY_2019_ERR3406169_bin.5_k141_501 ShaoY_2019_ERR3406169_bin.5_k141_501_13 16604 17275 + 3.A.1.122.8
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_7
Type: CAZyme
Location: 7556 - 9955 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_8
Type: TC
Location: 10175 - 12079 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_9
Type: TC
Location: 12108 - 12629 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_10
Type: pfam
Location: 12745 - 14142 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_11
Type: TC
Location: 14142 - 15482 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_12
Type: pfam
Location: 15469 - 16602 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_501_13
Type: TC
Location: 16604 - 17275 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.5_k141_501_8 vegetarian > vegan 1.16436 0.02523
ShaoY_2019_ERR3406169_bin.5_k141_501_10 vegetarian > vegan 1.79345 0.02445

🧭 Explore Read Mapping of CGC

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