Cluster: ShaoY_2019_ERR3406169_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.5_k141_474 | ShaoY_2019_ERR3406169_bin.5_k141_474_63 | 69348 | 71252 | + | 2.A.37.1.2 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_474 | ShaoY_2019_ERR3406169_bin.5_k141_474_64 | 71288 | 73423 | - | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_474 | ShaoY_2019_ERR3406169_bin.5_k141_474_65 | 73542 | 74522 | - | 3.A.1.15.5 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_474 | ShaoY_2019_ERR3406169_bin.5_k141_474_66 | 74690 | 75451 | - | ThiF |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_474 | ShaoY_2019_ERR3406169_bin.5_k141_474_67 | 75451 | 76578 | - | GH102 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_474_63
Type: TC
Location: 69348 - 71252 (+)
Type: TC
Location: 69348 - 71252 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_474_64
Type: pfam
Location: 71288 - 73423 (-)
Type: pfam
Location: 71288 - 73423 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_474_65
Type: TC
Location: 73542 - 74522 (-)
Type: TC
Location: 73542 - 74522 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_474_66
Type: pfam
Location: 74690 - 75451 (-)
Type: pfam
Location: 74690 - 75451 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_474_67
Type: CAZyme
Location: 75451 - 76578 (-)
Type: CAZyme
Location: 75451 - 76578 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_474_63 | vegetarian > omnivore | 1.10943 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_63 | vegetarian > vegan | 1.17841 | 0.03336 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_64 | vegan > omnivore | 1.30629 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_64 | vegetarian > omnivore | 1.47456 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_65 | vegan > omnivore | 1.20583 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_65 | vegetarian > omnivore | 1.12586 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_66 | vegetarian > omnivore | 1.68091 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_66 | vegan > omnivore | 1.37562 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_474_67 | vegetarian > omnivore | 1.34414 | 0.00878 |