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Cluster: ShaoY_2019_ERR3406169_bin.5_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_95 107606 108550 + 2.A.16.1.2
TF ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_96 108629 109342 - GntR
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_97 109535 111040 + GH77
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_98 111040 113307 + GT35
pfam ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_99 113317 114108 + Exo_endo_phos
TC ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_100 114119 115783 + 4.A.1.1.11
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_95
Type: TC
Location: 107606 - 108550 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_96
Type: TF
Location: 108629 - 109342 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_97
Type: CAZyme
Location: 109535 - 111040 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_98
Type: CAZyme
Location: 111040 - 113307 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_99
Type: pfam
Location: 113317 - 114108 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_100
Type: TC
Location: 114119 - 115783 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.5_k141_1801_100 vegan > omnivore 1.15492 0.00732

🧭 Explore Read Mapping of CGC

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