dbCAN Logo

Cluster: ShaoY_2019_ERR3406169_bin.5_CGC19

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_8 10300 10557 + 8.A.8.1.1
TC ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_9 10637 12364 + 8.A.7.1.1
TC ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_10 12424 12924 + 4.A.1.1.1
pfam ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_11 12997 14196 + PMI_typeI_cat | MPI_cupin_dom
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_1801 ShaoY_2019_ERR3406169_bin.5_k141_1801_12 14318 17344 + GH2
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_8
Type: TC
Location: 10300 - 10557 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_9
Type: TC
Location: 10637 - 12364 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_10
Type: TC
Location: 12424 - 12924 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_11
Type: pfam
Location: 12997 - 14196 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1801_12
Type: CAZyme
Location: 14318 - 17344 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.5_k141_1801_8 vegetarian > omnivore 1.17172 0.00878
ShaoY_2019_ERR3406169_bin.5_k141_1801_9 vegan > omnivore 1.47153 0.00732
ShaoY_2019_ERR3406169_bin.5_k141_1801_10 vegan > omnivore 2.61713 0.00732
ShaoY_2019_ERR3406169_bin.5_k141_1801_10 vegetarian > omnivore 1.47646 0.00878

🧭 Explore Read Mapping of CGC

← Back to Cluster List