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Cluster: ShaoY_2019_ERR3406169_bin.5_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406169_bin.5_k141_1744 ShaoY_2019_ERR3406169_bin.5_k141_1744_6 4236 4541 + 9.B.21.2.1
TC ShaoY_2019_ERR3406169_bin.5_k141_1744 ShaoY_2019_ERR3406169_bin.5_k141_1744_7 4541 6406 + 2.A.16.2.2
pfam ShaoY_2019_ERR3406169_bin.5_k141_1744 ShaoY_2019_ERR3406169_bin.5_k141_1744_8 6448 7989 - PFL-like | YjjI-like
TC ShaoY_2019_ERR3406169_bin.5_k141_1744 ShaoY_2019_ERR3406169_bin.5_k141_1744_9 8183 8848 + 2.A.115.2.7
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_1744 ShaoY_2019_ERR3406169_bin.5_k141_1744_10 8798 9826 - GT9
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1744_6
Type: TC
Location: 4236 - 4541 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1744_7
Type: TC
Location: 4541 - 6406 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1744_8
Type: pfam
Location: 6448 - 7989 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1744_9
Type: TC
Location: 8183 - 8848 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1744_10
Type: CAZyme
Location: 8798 - 9826 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.5_k141_1744_9 vegan > omnivore 1.12618 0.00732
ShaoY_2019_ERR3406169_bin.5_k141_1744_9 vegetarian > omnivore 1.22872 0.00878
ShaoY_2019_ERR3406169_bin.5_k141_1744_10 vegan > omnivore 1.49009 0.00732
ShaoY_2019_ERR3406169_bin.5_k141_1744_10 vegetarian > omnivore 1.29198 0.00878

🧭 Explore Read Mapping of CGC

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