Cluster: ShaoY_2019_ERR3406169_bin.5_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_1 | 2 | 667 | + | 1.B.40.2.2 |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_2 | 888 | 1748 | + | GT8 |
| STP | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_3 | 1812 | 3182 | + | Pyr_redox_2 |
| peptidase | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_4 | 3251 | 4078 | - | C44.UPW |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_5 | 4301 | 5617 | - | 2.A.1.15.11 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_6 | 5632 | 6339 | - | 2.A.88.8.6 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_1672 | ShaoY_2019_ERR3406169_bin.5_k141_1672_7 | 6581 | 8836 | + | 1.B.14.1.3 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_1
Type: TC
Location: 2 - 667 (+)
Type: TC
Location: 2 - 667 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_2
Type: CAZyme
Location: 888 - 1748 (+)
Type: CAZyme
Location: 888 - 1748 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_3
Type: STP
Location: 1812 - 3182 (+)
Type: STP
Location: 1812 - 3182 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_4
Type: peptidase
Location: 3251 - 4078 (-)
Type: peptidase
Location: 3251 - 4078 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_5
Type: TC
Location: 4301 - 5617 (-)
Type: TC
Location: 4301 - 5617 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_6
Type: TC
Location: 5632 - 6339 (-)
Type: TC
Location: 5632 - 6339 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_1672_7
Type: TC
Location: 6581 - 8836 (+)
Type: TC
Location: 6581 - 8836 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_1672_3 | vegan > omnivore | 1.20052 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_1672_3 | vegetarian > omnivore | 1.36506 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_1672_4 | vegan > omnivore | 1.40452 | 0.00732 |