Cluster: ShaoY_2019_ERR3406169_bin.5_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_146 | 161135 | 162241 | - | GH177 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_147 | 162252 | 163325 | - | GFO_IDH_MocA | GFO_IDH_MocA_C | F420_oxidored | GFO_IDH_MocA_C3 |
| TF | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_148 | 163315 | 164025 | - | GntR |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_149 | 164200 | 165426 | + | 2.A.1.12.1 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_150 | 165582 | 166967 | + | 2.A.47.5.2 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_146
Type: CAZyme
Location: 161135 - 162241 (-)
Type: CAZyme
Location: 161135 - 162241 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_147
Type: pfam
Location: 162252 - 163325 (-)
Type: pfam
Location: 162252 - 163325 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_148
Type: TF
Location: 163315 - 164025 (-)
Type: TF
Location: 163315 - 164025 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_149
Type: TC
Location: 164200 - 165426 (+)
Type: TC
Location: 164200 - 165426 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_150
Type: TC
Location: 165582 - 166967 (+)
Type: TC
Location: 165582 - 166967 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.