Cluster: ShaoY_2019_ERR3406169_bin.5_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_62 | 73195 | 75183 | - | GT41 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_63 | 75223 | 76560 | - | UPF0004 | TRAM | Radical_SAM | TRAM_2 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_932 | ShaoY_2019_ERR3406169_bin.5_k141_932_64 | 76689 | 77441 | + | 9.B.20.2.2 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_62
Type: CAZyme
Location: 73195 - 75183 (-)
Type: CAZyme
Location: 73195 - 75183 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_63
Type: pfam
Location: 75223 - 76560 (-)
Type: pfam
Location: 75223 - 76560 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_932_64
Type: TC
Location: 76689 - 77441 (+)
Type: TC
Location: 76689 - 77441 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.