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Cluster: ShaoY_2019_ERR3406169_bin.5_CGC11

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406169_bin.5_k141_782 ShaoY_2019_ERR3406169_bin.5_k141_782_190 197065 198915 + 3.A.18.1.1
CAZyme ShaoY_2019_ERR3406169_bin.5_k141_782 ShaoY_2019_ERR3406169_bin.5_k141_782_191 199011 200405 + GH23
NULL(UNKNOWN) ShaoY_2019_ERR3406169_bin.5_k141_782 ShaoY_2019_ERR3406169_bin.5_k141_782_192 200462 200605 + NULL(UNKNOWN)
[View Structural Homologs]
pfam ShaoY_2019_ERR3406169_bin.5_k141_782 ShaoY_2019_ERR3406169_bin.5_k141_782_193 200651 200974 - Ribosomal_S30AE
TC ShaoY_2019_ERR3406169_bin.5_k141_782 ShaoY_2019_ERR3406169_bin.5_k141_782_194 201219 202589 - 2.A.25.1.4
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_190
Type: TC
Location: 197065 - 198915 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_191
Type: CAZyme
Location: 199011 - 200405 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_192
Type:
Location: 200462 - 200605 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_193
Type: pfam
Location: 200651 - 200974 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_194
Type: TC
Location: 201219 - 202589 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.5_k141_782_191 vegetarian > omnivore 1.56333 0.00878
ShaoY_2019_ERR3406169_bin.5_k141_782_192 vegetarian > omnivore 1.49609 0.00878

🧭 Explore Read Mapping of CGC

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