Cluster: ShaoY_2019_ERR3406169_bin.5_CGC10
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_38 | 37358 | 38239 | + | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_39 | 38239 | 39141 | + | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_40 | 39145 | 39996 | + | 3.A.1.15.4 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_41 | 39989 | 40822 | + | 3.A.1.15.4 |
| pfam | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_42 | 40857 | 42029 | - | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_782 | ShaoY_2019_ERR3406169_bin.5_k141_782_43 | 42026 | 43069 | - | GH3 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_38
Type: TC
Location: 37358 - 38239 (+)
Type: TC
Location: 37358 - 38239 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_39
Type: TC
Location: 38239 - 39141 (+)
Type: TC
Location: 38239 - 39141 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_40
Type: TC
Location: 39145 - 39996 (+)
Type: TC
Location: 39145 - 39996 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_41
Type: TC
Location: 39989 - 40822 (+)
Type: TC
Location: 39989 - 40822 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_42
Type: pfam
Location: 40857 - 42029 (-)
Type: pfam
Location: 40857 - 42029 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_782_43
Type: CAZyme
Location: 42026 - 43069 (-)
Type: CAZyme
Location: 42026 - 43069 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_782_40 | vegetarian > omnivore | 1.78531 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_782_40 | vegan > omnivore | 2.25477 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_782_41 | vegan > omnivore | 2.03167 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_782_41 | vegetarian > omnivore | 1.28010 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_782_42 | vegan > omnivore | 1.11175 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_782_42 | vegetarian > omnivore | 1.05991 | 0.00878 |