Cluster: ShaoY_2019_ERR3406169_bin.5_CGC1
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.5
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.5_k141_445 | ShaoY_2019_ERR3406169_bin.5_k141_445_4 | 3103 | 3918 | + | GT2 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_445 | ShaoY_2019_ERR3406169_bin.5_k141_445_5 | 3915 | 5291 | + | 2.A.38.1.1 |
| TC | ShaoY_2019_ERR3406169_bin.5_k141_445 | ShaoY_2019_ERR3406169_bin.5_k141_445_6 | 5370 | 5753 | + | 1.A.22.1.1 |
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_445_4
Type: CAZyme
Location: 3103 - 3918 (+)
Type: CAZyme
Location: 3103 - 3918 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_445_5
Type: TC
Location: 3915 - 5291 (+)
Type: TC
Location: 3915 - 5291 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.5_k141_445_6
Type: TC
Location: 5370 - 5753 (+)
Type: TC
Location: 5370 - 5753 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_Q
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.5_k141_445_4 | vegan > omnivore | 1.54734 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_445_4 | vegetarian > omnivore | 1.04893 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_445_5 | vegetarian > omnivore | 1.36352 | 0.00878 |
| ShaoY_2019_ERR3406169_bin.5_k141_445_6 | vegan > omnivore | 1.56455 | 0.00732 |
| ShaoY_2019_ERR3406169_bin.5_k141_445_6 | vegetarian > omnivore | 2.79859 | 0.00878 |