Cluster: ShaoY_2019_ERR3406169_bin.3_CGC4
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.3_k141_787 | ShaoY_2019_ERR3406169_bin.3_k141_787_42 | 39690 | 40373 | + | 3.A.1.122.14 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_787 | ShaoY_2019_ERR3406169_bin.3_k141_787_43 | 40384 | 41643 | + | 3.A.1.122.13 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_787 | ShaoY_2019_ERR3406169_bin.3_k141_787_44 | 41820 | 42830 | + | Gp_dh_N | Gp_dh_C |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_787 | ShaoY_2019_ERR3406169_bin.3_k141_787_45 | 42898 | 43773 | - | PseudoU_synth_2 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_787 | ShaoY_2019_ERR3406169_bin.3_k141_787_46 | 43860 | 46055 | + | GT51 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_787_42
Type: TC
Location: 39690 - 40373 (+)
Type: TC
Location: 39690 - 40373 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_787_43
Type: TC
Location: 40384 - 41643 (+)
Type: TC
Location: 40384 - 41643 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_787_44
Type: pfam
Location: 41820 - 42830 (+)
Type: pfam
Location: 41820 - 42830 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_787_45
Type: pfam
Location: 42898 - 43773 (-)
Type: pfam
Location: 42898 - 43773 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_787_46
Type: CAZyme
Location: 43860 - 46055 (+)
Type: CAZyme
Location: 43860 - 46055 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.