Cluster: ShaoY_2019_ERR3406169_bin.3_CGC24
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_81 | 85371 | 86075 | + | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_82 | 86068 | 86874 | + | 3.A.1.15.3 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_83 | 86884 | 88389 | + | 3.A.1.15.3 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_84 | 89238 | 90389 | + | Fe-ADH | Fe-ADH_2 | ADH_Fe_C |
| peptidase | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_85 | 90521 | 91423 | + | I87.UPW |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_86 | 91607 | 95395 | + | CBM71 | GH2 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_87 | 95397 | 97079 | + | GH29 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_88 | 97125 | 99209 | - | GH92 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_89 | 99380 | 100660 | + | GH125 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_90 | 100758 | 103403 | + | GH38 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_91 | 103475 | 104356 | + | ROK |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_92 | 104350 | 106230 | + | GH20 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_93 | 106441 | 107370 | + | 3.A.1.1.10 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_2042 | ShaoY_2019_ERR3406169_bin.3_k141_2042_94 | 107384 | 108307 | + | 3.A.1.1.29 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_81
Type: TC
Location: 85371 - 86075 (+)
Type: TC
Location: 85371 - 86075 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_82
Type: TC
Location: 86068 - 86874 (+)
Type: TC
Location: 86068 - 86874 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_83
Type: TC
Location: 86884 - 88389 (+)
Type: TC
Location: 86884 - 88389 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_84
Type: pfam
Location: 89238 - 90389 (+)
Type: pfam
Location: 89238 - 90389 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_85
Type: peptidase
Location: 90521 - 91423 (+)
Type: peptidase
Location: 90521 - 91423 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_86
Type: CAZyme
Location: 91607 - 95395 (+)
Type: CAZyme
Location: 91607 - 95395 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_87
Type: CAZyme
Location: 95397 - 97079 (+)
Type: CAZyme
Location: 95397 - 97079 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_88
Type: CAZyme
Location: 97125 - 99209 (-)
Type: CAZyme
Location: 97125 - 99209 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_89
Type: CAZyme
Location: 99380 - 100660 (+)
Type: CAZyme
Location: 99380 - 100660 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_90
Type: CAZyme
Location: 100758 - 103403 (+)
Type: CAZyme
Location: 100758 - 103403 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_91
Type: pfam
Location: 103475 - 104356 (+)
Type: pfam
Location: 103475 - 104356 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_92
Type: CAZyme
Location: 104350 - 106230 (+)
Type: CAZyme
Location: 104350 - 106230 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_93
Type: TC
Location: 106441 - 107370 (+)
Type: TC
Location: 106441 - 107370 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_2042_94
Type: TC
Location: 107384 - 108307 (+)
Type: TC
Location: 107384 - 108307 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.