Cluster: ShaoY_2019_ERR3406169_bin.3_CGC21
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 6
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- CGC Family ID: CGCFAM_00463
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_44 | 43592 | 45103 | - | GT4 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_45 | 45115 | 47490 | - | 3.A.5.10.1 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_46 | 47480 | 47959 | - | 3.A.5.10.1 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_47 | 47959 | 49368 | - | 3.A.5.10.1 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_48 | 49481 | 51055 | - | 3.A.5.10.1 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_49 | 51071 | 52300 | - | 3.A.5.10.1 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_50 | 52430 | 53437 | - | GT113 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_51 | 53446 | 56664 | - | GT101 | GT8 | GT8 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_52 | 56675 | 57898 | - | GT8 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_53 | 57867 | 59114 | - | GT8 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_54 | 59118 | 59990 | - | Hexapep | Hexapep_2 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_55 | 60079 | 60957 | - | GT2 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_44
Type: CAZyme
Location: 43592 - 45103 (-)
Type: CAZyme
Location: 43592 - 45103 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_45
Type: TC
Location: 45115 - 47490 (-)
Type: TC
Location: 45115 - 47490 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_46
Type: TC
Location: 47480 - 47959 (-)
Type: TC
Location: 47480 - 47959 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_47
Type: TC
Location: 47959 - 49368 (-)
Type: TC
Location: 47959 - 49368 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_48
Type: TC
Location: 49481 - 51055 (-)
Type: TC
Location: 49481 - 51055 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_49
Type: TC
Location: 51071 - 52300 (-)
Type: TC
Location: 51071 - 52300 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_50
Type: CAZyme
Location: 52430 - 53437 (-)
Type: CAZyme
Location: 52430 - 53437 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_51
Type: CAZyme
Location: 53446 - 56664 (-)
Type: CAZyme
Location: 53446 - 56664 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_52
Type: CAZyme
Location: 56675 - 57898 (-)
Type: CAZyme
Location: 56675 - 57898 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_53
Type: CAZyme
Location: 57867 - 59114 (-)
Type: CAZyme
Location: 57867 - 59114 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_54
Type: pfam
Location: 59118 - 59990 (-)
Type: pfam
Location: 59118 - 59990 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_55
Type: CAZyme
Location: 60079 - 60957 (-)
Type: CAZyme
Location: 60079 - 60957 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.