Cluster: ShaoY_2019_ERR3406169_bin.3_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_12 | 11728 | 13665 | - | 4.A.1.2.12 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_13 | 14048 | 15502 | + | GH32 |
| TF | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_14 | 15483 | 16448 | + | LacI |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_15 | 16484 | 17758 | - | 2.A.6.6.11 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_16 | 17758 | 18930 | - | Chal_sti_synt_N | HMG_CoA_synt_N | HMG_CoA_synt_C | HMG_CoA_synt_C |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_17 | 19044 | 19493 | - | ThrE_2 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_18 | 19495 | 20253 | - | 2.A.79.1.5 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1961 | ShaoY_2019_ERR3406169_bin.3_k141_1961_19 | 20342 | 22243 | - | 9.B.106.2.2 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_12
Type: TC
Location: 11728 - 13665 (-)
Type: TC
Location: 11728 - 13665 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_13
Type: CAZyme
Location: 14048 - 15502 (+)
Type: CAZyme
Location: 14048 - 15502 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_14
Type: TF
Location: 15483 - 16448 (+)
Type: TF
Location: 15483 - 16448 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_15
Type: TC
Location: 16484 - 17758 (-)
Type: TC
Location: 16484 - 17758 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_16
Type: pfam
Location: 17758 - 18930 (-)
Type: pfam
Location: 17758 - 18930 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_17
Type: pfam
Location: 19044 - 19493 (-)
Type: pfam
Location: 19044 - 19493 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_18
Type: TC
Location: 19495 - 20253 (-)
Type: TC
Location: 19495 - 20253 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1961_19
Type: TC
Location: 20342 - 22243 (-)
Type: TC
Location: 20342 - 22243 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.