Cluster: ShaoY_2019_ERR3406169_bin.3_CGC19
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_26 | 28536 | 30170 | - | 3.A.1.147.8 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_27 | 30151 | 30900 | - | 3.A.1.147.8 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_28 | 31079 | 32533 | + | GH13_5 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_29 | 32728 | 35346 | - | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_30 | 35368 | 35856 | - | LOR |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_31 | 36532 | 37602 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_32 | 37599 | 38372 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_33 | 38369 | 39175 | - | 3.A.1.11.7 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1871 | ShaoY_2019_ERR3406169_bin.3_k141_1871_34 | 39156 | 40313 | - | 3.A.1.11.7 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_26
Type: TC
Location: 28536 - 30170 (-)
Type: TC
Location: 28536 - 30170 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_27
Type: TC
Location: 30151 - 30900 (-)
Type: TC
Location: 30151 - 30900 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_28
Type: CAZyme
Location: 31079 - 32533 (+)
Type: CAZyme
Location: 31079 - 32533 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_29
Type: pfam
Location: 32728 - 35346 (-)
Type: pfam
Location: 32728 - 35346 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_30
Type: pfam
Location: 35368 - 35856 (-)
Type: pfam
Location: 35368 - 35856 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_31
Type: TC
Location: 36532 - 37602 (-)
Type: TC
Location: 36532 - 37602 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_32
Type: TC
Location: 37599 - 38372 (-)
Type: TC
Location: 37599 - 38372 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_33
Type: TC
Location: 38369 - 39175 (-)
Type: TC
Location: 38369 - 39175 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1871_34
Type: TC
Location: 39156 - 40313 (-)
Type: TC
Location: 39156 - 40313 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.3_k141_1871_33 | vegan > omnivore | 3.90664 | 0.01604 |
| ShaoY_2019_ERR3406169_bin.3_k141_1871_33 | vegetarian > omnivore | 1.05060 | 0.03582 |