Cluster: ShaoY_2019_ERR3406169_bin.3_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 2
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- CGC Family ID: CGCFAM_01081
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_4 | 2425 | 4587 | + | GH36 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_5 | 4622 | 5872 | + | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_6 | 5891 | 6763 | + | 3.A.1.1.28 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_7 | 6780 | 7613 | + | 3.A.1.1.28 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_8 | 7862 | 9304 | + | GH13_18 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_9 | 9442 | 10635 | + | 9.B.67.1.2 |
| TF | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_10 | 10779 | 11222 | + | MarR |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_11 | 11299 | 11448 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_12 | 11463 | 12191 | + | 3.A.1.12.8 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_13 | 12184 | 13704 | + | 3.A.1.12.8 |
| STP | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_14 | 13842 | 14414 | - | TetR_N |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1736 | ShaoY_2019_ERR3406169_bin.3_k141_1736_15 | 14511 | 15401 | + | 2.A.4.1.7 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_4
Type: CAZyme
Location: 2425 - 4587 (+)
Type: CAZyme
Location: 2425 - 4587 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_5
Type: TC
Location: 4622 - 5872 (+)
Type: TC
Location: 4622 - 5872 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_6
Type: TC
Location: 5891 - 6763 (+)
Type: TC
Location: 5891 - 6763 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_7
Type: TC
Location: 6780 - 7613 (+)
Type: TC
Location: 6780 - 7613 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_8
Type: CAZyme
Location: 7862 - 9304 (+)
Type: CAZyme
Location: 7862 - 9304 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_9
Type: TC
Location: 9442 - 10635 (+)
Type: TC
Location: 9442 - 10635 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_10
Type: TF
Location: 10779 - 11222 (+)
Type: TF
Location: 10779 - 11222 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_11
Type:
Location: 11299 - 11448 (+)
Type:
Location: 11299 - 11448 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_12
Type: TC
Location: 11463 - 12191 (+)
Type: TC
Location: 11463 - 12191 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_13
Type: TC
Location: 12184 - 13704 (+)
Type: TC
Location: 12184 - 13704 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_14
Type: STP
Location: 13842 - 14414 (-)
Type: STP
Location: 13842 - 14414 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1736_15
Type: TC
Location: 14511 - 15401 (+)
Type: TC
Location: 14511 - 15401 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.