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Cluster: ShaoY_2019_ERR3406169_bin.3_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_29 24158 25549 - CE4
sulfatase ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_30 25637 26827 - S1_2
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_31 27215 28558 - 3.A.18.1.1
pfam ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_32 28699 29514 - Exo_endo_phos
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_33 29566 31746 - 4.A.1.1.11
pfam ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_34 31926 32852 - FtsX | FtsX_ECD
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_35 32845 33537 - 3.A.1.140.1
pfam ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_36 33555 34532 - RF-1 | PCRF
STP ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_37 34758 35414 - CBS | CBS
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_38 35722 36432 - 3.A.1.4.10
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_39 36432 37196 - 3.A.1.4.10
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_40 37196 38152 - 3.A.1.4.10
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_41 38156 39025 - 3.A.1.4.10
TC ShaoY_2019_ERR3406169_bin.3_k141_1516 ShaoY_2019_ERR3406169_bin.3_k141_1516_42 39246 40406 - 3.A.1.4.10
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_29
Type: CAZyme
Location: 24158 - 25549 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_30
Type: sulfatase
Location: 25637 - 26827 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_31
Type: TC
Location: 27215 - 28558 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_32
Type: pfam
Location: 28699 - 29514 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_33
Type: TC
Location: 29566 - 31746 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_34
Type: pfam
Location: 31926 - 32852 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_35
Type: TC
Location: 32845 - 33537 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_36
Type: pfam
Location: 33555 - 34532 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_37
Type: STP
Location: 34758 - 35414 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_38
Type: TC
Location: 35722 - 36432 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_39
Type: TC
Location: 36432 - 37196 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_40
Type: TC
Location: 37196 - 38152 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_41
Type: TC
Location: 38156 - 39025 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1516_42
Type: TC
Location: 39246 - 40406 (-)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota
→
Class
Bacilli
→
Order
Lactobacillales
→
Family
Streptococcaceae
→
Genus
Streptococcus
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
ShaoY_2019_ERR3406169_bin.3_k141_1516_38 vegan > omnivore 2.43785 0.01604

🧭 Explore Read Mapping of CGC

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