Cluster: ShaoY_2019_ERR3406169_bin.3_CGC11
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_31 | 31740 | 32720 | + | 9.B.146.1.6 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_32 | 32889 | 32978 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_33 | 33061 | 35166 | + | 3.A.9.1.2 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_34 | 35231 | 35713 | - | LuxS |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_35 | 35808 | 37292 | - | DUF1846 | DUF1846_C |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_36 | 37445 | 39055 | + | GH13_31 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_37 | 39223 | 41190 | + | 3.A.1.5.25 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_1452 | ShaoY_2019_ERR3406169_bin.3_k141_1452_38 | 41396 | 43354 | + | 3.A.1.5.19 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_31
Type: TC
Location: 31740 - 32720 (+)
Type: TC
Location: 31740 - 32720 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_32
Type:
Location: 32889 - 32978 (+)
Type:
Location: 32889 - 32978 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_33
Type: TC
Location: 33061 - 35166 (+)
Type: TC
Location: 33061 - 35166 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_34
Type: pfam
Location: 35231 - 35713 (-)
Type: pfam
Location: 35231 - 35713 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_35
Type: pfam
Location: 35808 - 37292 (-)
Type: pfam
Location: 35808 - 37292 (-)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_36
Type: CAZyme
Location: 37445 - 39055 (+)
Type: CAZyme
Location: 37445 - 39055 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_37
Type: TC
Location: 39223 - 41190 (+)
Type: TC
Location: 39223 - 41190 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_1452_38
Type: TC
Location: 41396 - 43354 (+)
Type: TC
Location: 41396 - 43354 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406169_bin.3_k141_1452_33 | vegetarian > omnivore | 1.01335 | 0.02605 |
| ShaoY_2019_ERR3406169_bin.3_k141_1452_33 | vegetarian > vegan | 1.21858 | 0.01983 |