Cluster: ShaoY_2019_ERR3406169_bin.3_CGC1
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: ShaoY_2019_ERR3406169_bin.3
- CGC Family ID: CGCFAM_00401
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_5 | 2966 | 3946 | + | CE7 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_6 | 4253 | 8131 | + | CBM40 | GH33 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_7 | 8660 | 9112 | + | DUF386 |
| STP | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_8 | 9131 | 10468 | + | SBP_bac_1 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_9 | 10547 | 11431 | + | 3.A.1.1.25 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_10 | 11431 | 12264 | + | 3.A.1.1.41 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_11 | 12281 | 14374 | + | CBM40 | GH33 |
| CAZyme | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_12 | 14387 | 15490 | + | GH177 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_13 | 15663 | 16361 | + | NanE |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_14 | 16475 | 17803 | + | 3.A.1.1.42 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_15 | 18004 | 18891 | + | 3.A.1.1.20 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_16 | 18907 | 19746 | + | 3.A.1.1.34 |
| pfam | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_17 | 19973 | 20425 | + | DUF386 |
| TC | ShaoY_2019_ERR3406169_bin.3_k141_367 | ShaoY_2019_ERR3406169_bin.3_k141_367_18 | 20445 | 21089 | + | 9.B.28.1.4 |
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_5
Type: CAZyme
Location: 2966 - 3946 (+)
Type: CAZyme
Location: 2966 - 3946 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_6
Type: CAZyme
Location: 4253 - 8131 (+)
Type: CAZyme
Location: 4253 - 8131 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_7
Type: pfam
Location: 8660 - 9112 (+)
Type: pfam
Location: 8660 - 9112 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_8
Type: STP
Location: 9131 - 10468 (+)
Type: STP
Location: 9131 - 10468 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_9
Type: TC
Location: 10547 - 11431 (+)
Type: TC
Location: 10547 - 11431 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_10
Type: TC
Location: 11431 - 12264 (+)
Type: TC
Location: 11431 - 12264 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_11
Type: CAZyme
Location: 12281 - 14374 (+)
Type: CAZyme
Location: 12281 - 14374 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_12
Type: CAZyme
Location: 14387 - 15490 (+)
Type: CAZyme
Location: 14387 - 15490 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_13
Type: pfam
Location: 15663 - 16361 (+)
Type: pfam
Location: 15663 - 16361 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_14
Type: TC
Location: 16475 - 17803 (+)
Type: TC
Location: 16475 - 17803 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_15
Type: TC
Location: 18004 - 18891 (+)
Type: TC
Location: 18004 - 18891 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_16
Type: TC
Location: 18907 - 19746 (+)
Type: TC
Location: 18907 - 19746 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_17
Type: pfam
Location: 19973 - 20425 (+)
Type: pfam
Location: 19973 - 20425 (+)
Gene ID: ShaoY_2019_ERR3406169_bin.3_k141_367_18
Type: TC
Location: 20445 - 21089 (+)
Type: TC
Location: 20445 - 21089 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Streptococcaceae
Genus
Streptococcus
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.