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Cluster: ShaoY_2019_ERR3406121_bin.2_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_10 13899 15581 + 2.A.66.4.4
pfam ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_11 15588 17528 + GIY-YIG | UVR | UvrC_RNaseH_dom | HHH_2 | HHH_5 | UvrC_RNaseH
TC ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_12 17894 19507 + 3.A.1.5.27
TC ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_13 19665 20621 + 3.A.1.5.38
TC ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_14 20625 22640 + 3.A.1.5.25
TC ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_15 22641 23468 + 3.A.1.5.27
CAZyme ShaoY_2019_ERR3406121_bin.2_k141_2329 ShaoY_2019_ERR3406121_bin.2_k141_2329_16 23600 24526 + CE7
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_10
Type: TC
Location: 13899 - 15581 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_11
Type: pfam
Location: 15588 - 17528 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_12
Type: TC
Location: 17894 - 19507 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_13
Type: TC
Location: 19665 - 20621 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_14
Type: TC
Location: 20625 - 22640 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_15
Type: TC
Location: 22641 - 23468 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2329_16
Type: CAZyme
Location: 23600 - 24526 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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