Cluster: ShaoY_2019_ERR3406121_bin.2_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406121_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_29 | 25575 | 26996 | - | GH1 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_30 | 27072 | 28850 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_31 | 29126 | 30136 | + | LacI |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_32 | 30474 | 32234 | - | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_33 | 32411 | 33853 | - | GH1 |
| TF | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_34 | 34195 | 35232 | + | LacI |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_35 | 35496 | 36935 | - | GH1 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_36 | 37002 | 38777 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_37 | 39135 | 40139 | + | LacI |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1861 | ShaoY_2019_ERR3406121_bin.2_k141_1861_38 | 40354 | 40692 | + | 4.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_29
Type: CAZyme
Location: 25575 - 26996 (-)
Type: CAZyme
Location: 25575 - 26996 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_30
Type: TC
Location: 27072 - 28850 (-)
Type: TC
Location: 27072 - 28850 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_31
Type: TF
Location: 29126 - 30136 (+)
Type: TF
Location: 29126 - 30136 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_32
Type: TC
Location: 30474 - 32234 (-)
Type: TC
Location: 30474 - 32234 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_33
Type: CAZyme
Location: 32411 - 33853 (-)
Type: CAZyme
Location: 32411 - 33853 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_34
Type: TF
Location: 34195 - 35232 (+)
Type: TF
Location: 34195 - 35232 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_35
Type: CAZyme
Location: 35496 - 36935 (-)
Type: CAZyme
Location: 35496 - 36935 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_36
Type: TC
Location: 37002 - 38777 (-)
Type: TC
Location: 37002 - 38777 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_37
Type: TF
Location: 39135 - 40139 (+)
Type: TF
Location: 39135 - 40139 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_38
Type: TC
Location: 40354 - 40692 (+)
Type: TC
Location: 40354 - 40692 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406121_bin.2_k141_1861_34 | vegetarian > omnivore | 1.02923 | 0.02677 |