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Cluster: ShaoY_2019_ERR3406121_bin.2_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_11 9894 10337 + 4.A.6.1.16
pfam ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_12 10337 10618 + YajC
TC ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_13 10655 11137 + 4.A.6.1.4
TC ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_14 11228 12028 + 4.A.6.1.4
TC ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_15 12018 13100 + 4.A.6.1.4
TF ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_16 13286 14017 + GntR
STP ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_17 14132 15298 + SIS | SIS
CAZyme ShaoY_2019_ERR3406121_bin.2_k141_1861 ShaoY_2019_ERR3406121_bin.2_k141_1861_18 15416 16585 + CE9
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_11
Type: TC
Location: 9894 - 10337 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_12
Type: pfam
Location: 10337 - 10618 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_13
Type: TC
Location: 10655 - 11137 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_14
Type: TC
Location: 11228 - 12028 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_15
Type: TC
Location: 12018 - 13100 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_16
Type: TF
Location: 13286 - 14017 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_17
Type: STP
Location: 14132 - 15298 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1861_18
Type: CAZyme
Location: 15416 - 16585 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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