Cluster: ShaoY_2019_ERR3406121_bin.2_CGC4
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406121_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_24 | 24795 | 25580 | - | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_25 | 25603 | 26751 | - | 3.A.1.3.20 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_26 | 26761 | 27687 | - | 3.A.1.3.20 |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_27 | 27968 | 28861 | - | Aldose_epim |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_28 | 28941 | 29807 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_29 | 30068 | 31321 | + | 2.A.1.2.25 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_30 | 31549 | 33111 | - | 4.A.1.1.3 |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_1674 | ShaoY_2019_ERR3406121_bin.2_k141_1674_31 | 33194 | 34519 | - | GH4 |
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_24
Type: TC
Location: 24795 - 25580 (-)
Type: TC
Location: 24795 - 25580 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_25
Type: TC
Location: 25603 - 26751 (-)
Type: TC
Location: 25603 - 26751 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_26
Type: TC
Location: 26761 - 27687 (-)
Type: TC
Location: 26761 - 27687 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_27
Type: pfam
Location: 27968 - 28861 (-)
Type: pfam
Location: 27968 - 28861 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_28
Type:
Location: 28941 - 29807 (-)
Type:
Location: 28941 - 29807 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_29
Type: TC
Location: 30068 - 31321 (+)
Type: TC
Location: 30068 - 31321 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_30
Type: TC
Location: 31549 - 33111 (-)
Type: TC
Location: 31549 - 33111 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1674_31
Type: CAZyme
Location: 33194 - 34519 (-)
Type: CAZyme
Location: 33194 - 34519 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406121_bin.2_k141_1674_24 | vegetarian > vegan | 1.28369 | 0.00229 |