Cluster: ShaoY_2019_ERR3406121_bin.2_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406121_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1372 | ShaoY_2019_ERR3406121_bin.2_k141_1372_15 | 19005 | 19478 | + | 4.A.6.1.18 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1372 | ShaoY_2019_ERR3406121_bin.2_k141_1372_16 | 19488 | 20273 | + | 4.A.6.1.13 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_1372 | ShaoY_2019_ERR3406121_bin.2_k141_1372_17 | 20276 | 21109 | + | 4.A.6.1.13 |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_1372 | ShaoY_2019_ERR3406121_bin.2_k141_1372_18 | 21136 | 21534 | + | EIIA-man |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_1372 | ShaoY_2019_ERR3406121_bin.2_k141_1372_19 | 21547 | 22671 | + | GH172 |
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1372_15
Type: TC
Location: 19005 - 19478 (+)
Type: TC
Location: 19005 - 19478 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1372_16
Type: TC
Location: 19488 - 20273 (+)
Type: TC
Location: 19488 - 20273 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1372_17
Type: TC
Location: 20276 - 21109 (+)
Type: TC
Location: 20276 - 21109 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1372_18
Type: pfam
Location: 21136 - 21534 (+)
Type: pfam
Location: 21136 - 21534 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_1372_19
Type: CAZyme
Location: 21547 - 22671 (+)
Type: CAZyme
Location: 21547 - 22671 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406121_bin.2_k141_1372_15 | vegan > omnivore | 1.01162 | 0.00701 |