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Cluster: ShaoY_2019_ERR3406121_bin.2_CGC13

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_142 177733 178761 + 2.A.2.5.1
TC ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_143 178758 179291 + 2.A.2.5.1
CAZyme ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_144 179408 181003 + GH28
CAZyme ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_145 181135 183297 + CE19 | CE8
pfam ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_146 183368 184039 + Lipase_GDSL | Lipase_GDSL_2
CAZyme ShaoY_2019_ERR3406121_bin.2_k141_3027 ShaoY_2019_ERR3406121_bin.2_k141_3027_147 184147 185385 + GH105
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_142
Type: TC
Location: 177733 - 178761 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_143
Type: TC
Location: 178758 - 179291 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_144
Type: CAZyme
Location: 179408 - 181003 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_145
Type: CAZyme
Location: 181135 - 183297 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_146
Type: pfam
Location: 183368 - 184039 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_147
Type: CAZyme
Location: 184147 - 185385 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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