Cluster: ShaoY_2019_ERR3406121_bin.2_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406121_bin.2
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_130 | 161996 | 165004 | + | GH2 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_131 | 165008 | 165463 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_132 | 165617 | 167080 | + | 2.A.3.7.4 |
| STP | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_133 | 167503 | 167751 | + | PTS-HPr |
| STP | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_134 | 167940 | 168182 | + | FeoA |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_135 | 168223 | 168444 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_3027 | ShaoY_2019_ERR3406121_bin.2_k141_3027_136 | 168568 | 170895 | + | 9.A.8.1.6 |
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_130
Type: CAZyme
Location: 161996 - 165004 (+)
Type: CAZyme
Location: 161996 - 165004 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_131
Type:
Location: 165008 - 165463 (+)
Type:
Location: 165008 - 165463 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_132
Type: TC
Location: 165617 - 167080 (+)
Type: TC
Location: 165617 - 167080 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_133
Type: STP
Location: 167503 - 167751 (+)
Type: STP
Location: 167503 - 167751 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_134
Type: STP
Location: 167940 - 168182 (+)
Type: STP
Location: 167940 - 168182 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_135
Type: TC
Location: 168223 - 168444 (+)
Type: TC
Location: 168223 - 168444 (+)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_3027_136
Type: TC
Location: 168568 - 170895 (+)
Type: TC
Location: 168568 - 170895 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.