Cluster: ShaoY_2019_ERR3406121_bin.2_CGC10
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406121_bin.2
- CGC Family ID: CGCFAM_00416
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_2 | 1751 | 3157 | - | 2.A.66.2.23 |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_3 | 3229 | 5145 | - | FAD_binding_4 | PS_pyruv_trans |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_4 | 5160 | 6509 | - | Wzy_C |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_5 | 6579 | 7505 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_6 | 7498 | 8400 | - | GT2 |
| CAZyme | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_7 | 8400 | 9143 | - | GT32 |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_8 | 9148 | 9633 | - | Glyco_tran_28_C |
| pfam | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_9 | 9646 | 10113 | - | Alg14 |
| TC | ShaoY_2019_ERR3406121_bin.2_k141_2493 | ShaoY_2019_ERR3406121_bin.2_k141_2493_10 | 10114 | 10827 | - | 9.B.18.1.2 |
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_2
Type: TC
Location: 1751 - 3157 (-)
Type: TC
Location: 1751 - 3157 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_3
Type: pfam
Location: 3229 - 5145 (-)
Type: pfam
Location: 3229 - 5145 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_4
Type: pfam
Location: 5160 - 6509 (-)
Type: pfam
Location: 5160 - 6509 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_5
Type: CAZyme
Location: 6579 - 7505 (-)
Type: CAZyme
Location: 6579 - 7505 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_6
Type: CAZyme
Location: 7498 - 8400 (-)
Type: CAZyme
Location: 7498 - 8400 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_7
Type: CAZyme
Location: 8400 - 9143 (-)
Type: CAZyme
Location: 8400 - 9143 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_8
Type: pfam
Location: 9148 - 9633 (-)
Type: pfam
Location: 9148 - 9633 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_9
Type: pfam
Location: 9646 - 10113 (-)
Type: pfam
Location: 9646 - 10113 (-)
Gene ID: ShaoY_2019_ERR3406121_bin.2_k141_2493_10
Type: TC
Location: 10114 - 10827 (-)
Type: TC
Location: 10114 - 10827 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406121_bin.2_k141_2493_9 | vegan > omnivore | 1.08214 | 0.00701 |
| ShaoY_2019_ERR3406121_bin.2_k141_2493_9 | vegetarian > omnivore | 1.10296 | 0.03932 |