Cluster: ShaoY_2019_ERR3406076_bin.13_CGC7
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 3
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_4 | 2236 | 3930 | + | 4.A.3.1.1 |
| STP | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_5 | 4093 | 4488 | + | DeoRC |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_6 | 5122 | 6543 | - | GH1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_7 | 6619 | 8397 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_8 | 8673 | 9683 | + | LacI |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_9 | 9937 | 11697 | - | 4.A.3.1.1 |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_10 | 11874 | 13316 | - | GH1 |
| TF | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_11 | 13658 | 14695 | + | LacI |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_12 | 14958 | 16397 | - | GH1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_13 | 16464 | 18239 | - | 4.A.3.1.1 |
| TF | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_14 | 18597 | 19601 | + | LacI |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_5755 | ShaoY_2019_ERR3406076_bin.13_k141_5755_15 | 19816 | 20154 | + | 4.A.3.1.2 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_4
Type: TC
Location: 2236 - 3930 (+)
Type: TC
Location: 2236 - 3930 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_5
Type: STP
Location: 4093 - 4488 (+)
Type: STP
Location: 4093 - 4488 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_6
Type: CAZyme
Location: 5122 - 6543 (-)
Type: CAZyme
Location: 5122 - 6543 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_7
Type: TC
Location: 6619 - 8397 (-)
Type: TC
Location: 6619 - 8397 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_8
Type: TF
Location: 8673 - 9683 (+)
Type: TF
Location: 8673 - 9683 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_9
Type: TC
Location: 9937 - 11697 (-)
Type: TC
Location: 9937 - 11697 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_10
Type: CAZyme
Location: 11874 - 13316 (-)
Type: CAZyme
Location: 11874 - 13316 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_11
Type: TF
Location: 13658 - 14695 (+)
Type: TF
Location: 13658 - 14695 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_12
Type: CAZyme
Location: 14958 - 16397 (-)
Type: CAZyme
Location: 14958 - 16397 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_13
Type: TC
Location: 16464 - 18239 (-)
Type: TC
Location: 16464 - 18239 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_14
Type: TF
Location: 18597 - 19601 (+)
Type: TF
Location: 18597 - 19601 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_5755_15
Type: TC
Location: 19816 - 20154 (+)
Type: TC
Location: 19816 - 20154 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3406076_bin.13_k141_5755_5 | vegan > omnivore | 1.04340 | 0.01057 |