Cluster: ShaoY_2019_ERR3406076_bin.13_CGC21
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3406076_bin.13
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_40 | 41915 | 42709 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_41 | 42702 | 43625 | - | 3.A.1.34.1 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_42 | 43830 | 44810 | - | 3.A.1.34.1 |
| NULL(UNKNOWN) | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_43 | 44971 | 45756 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_44 | 46015 | 47418 | - | tRNA-synt_2 | tRNA_anti-codon |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_45 | 47600 | 48163 | - | 4.A.1.2.6 |
| peptidase | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_46 | 48407 | 49306 | + | S09.UPW |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_47 | 49780 | 52140 | + | 9.A.8.1.6 |
| TC | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_48 | 52261 | 53457 | + | 2.A.1.2.18 |
| CAZyme | ShaoY_2019_ERR3406076_bin.13_k141_16864 | ShaoY_2019_ERR3406076_bin.13_k141_16864_49 | 53611 | 54987 | + | GH13_20 |
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_40
Type: TC
Location: 41915 - 42709 (-)
Type: TC
Location: 41915 - 42709 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_41
Type: TC
Location: 42702 - 43625 (-)
Type: TC
Location: 42702 - 43625 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_42
Type: TC
Location: 43830 - 44810 (-)
Type: TC
Location: 43830 - 44810 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_43
Type:
Location: 44971 - 45756 (-)
Type:
Location: 44971 - 45756 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_44
Type: pfam
Location: 46015 - 47418 (-)
Type: pfam
Location: 46015 - 47418 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_45
Type: TC
Location: 47600 - 48163 (-)
Type: TC
Location: 47600 - 48163 (-)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_46
Type: peptidase
Location: 48407 - 49306 (+)
Type: peptidase
Location: 48407 - 49306 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_47
Type: TC
Location: 49780 - 52140 (+)
Type: TC
Location: 49780 - 52140 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_48
Type: TC
Location: 52261 - 53457 (+)
Type: TC
Location: 52261 - 53457 (+)
Gene ID: ShaoY_2019_ERR3406076_bin.13_k141_16864_49
Type: CAZyme
Location: 53611 - 54987 (+)
Type: CAZyme
Location: 53611 - 54987 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.